Publications

  1. Gagarine Yaikhom, Hugh Morgan, Duncan Sneddon, Ahmad Retha, Julian Atienza-Herrero, Andrew Blake, James Brown, Armida Di Fenza, Tanja Fiegel, Neil Horner, Natalie Ring, Luis Santos, Henrik Westerberg, Steve D M Brown and Ann-Marie Mallon (2015) Comparative visualization of genotype-phenotype relationships. Nature Methods, 12, 698-699, July.
    doi:10.1038/nmeth.3477

  2. Gautier Koscielny, Gagarine Yaikhom, Vivek Iyer, Terrence F. Meehan, Hugh Morgan, Julian Atienza-Herrero, Andrew Blake, Chao-Kung Chen, Richard Easty, Armida Di Fenza, Tanja Fiegel, Mark Grifiths, Alan Horne, Natasha A. Karp, Natalja Kurbatova, Jeremy C. Mason, Peter Matthews, Darren J. Oakley, Asfand Qazi, Jack Regnart, Ahmad Retha, Luis A. Santos, Duncan J. Sneddon, Jonathan Warren, Henrik Westerberg, Robert J. Wilson, David G. Melvin, Damian Smedley, Steve D. M. Brown, Paul Flicek, William C. Skarnes, Ann-Marie Mallon and Helen Parkinson (2013) The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Research, November.
    doi:10.1093/nar/gkt977

  3. Natalie Ring, Terrence F. Meehan , Andrew Blake, James Brown, Chao-Kung Chen, Nathalie Conte, Armida Di Fenza, Tanja Fiegel, Neil Horner, Julius O. B. Jacobsen, Natasha Karp, Thomas Lawson, Jeremy C. Mason, Peter Matthews, Hugh Morgan, Mike Relac, Luis Santos, Damian Smedley, Duncan Sneddon, Alice Pengelly, Ilinca Tudose, Jonathan W. G. Warren, Henrik Westerberg, Gagarine Yaikhom, Helen Parkinson and Ann-Marie Mallon (2015) A mouse informatics platform for phenotypic and translational discovery. Mammalian Genome, 26(9), 413-421, October. 10.1007/s00335-015-9599-2

  4. Yaikhom, G., Walker, D.W., Walker, C. (2012) Improving Parallelisation of a Monte Carlo Radiotherapy Simulation Using MPI, Proceedings of the IPDPS Workshop, pp 1033-1039
    doi: 10.1109/IPDPSW.2012.126

  5. Yaikhom, G., Atkinson, M., van Hemert, J., Corcho, O., and Krause, A. (2011) Validation and mismatch repair of workflows through typed data streams, Phil. Trans. Royal Society A, 369 (1949), pages 3285-3299, August.
    doi: 10.1098/rsta.2011.0135

  6. Yaikhom, G., Liew, C.S., Han, L., van Hemert, J., Atkinson, M., and Krause, A. (2010) Federated enactment of workflow patterns. Lecture Notes in Computer Science (LNCS), 6271, pages 317–328, Springer.
    doi: 10.1007/978-3-642-15277-1_31

  7. Downes, P., Yaikhom, G., Giddy, J.P., Walker, D.W., Spezi, E., and Lewis, D.G. (2009) High Performance Computing for Monte Carlo Radiotherapy Calculations. Phil. Trans. Royal Society A, 367(1897), pages 2607–2617, June.
    doi: 10.1098/rsta.2009.0028

  8. Yaikhom, G. (2008) Message Passing without Memory Copy. Parallel Processing Letters, 18 (1), pages 87–100, March.
    doi: 10.1142/S0129626408003247

  9. Yaikhom, G., Giddy, J.P., Walker, D.W., Spezi, E., Lewis, D.G., and Downes, P. (2008) A Distributed Simulation Framework for Conformal Radiotherapy. IEEE IPDPS, pages 1–8, Florida, USA.
    doi: 10.1109/IPDPS.2008.4536471

  10. Yaikhom, G., Cole, M., Gilmore, S., and Hillston, J. (2007) A Structural Approach for Modelling Performance of Systems using Skeletons. Electronic Notes in Theoretical Computer Science (ENTCS), 190 (3), pages. 167–182.
    doi: 10.1016/j.entcs.2007.07.010

  11. Yaikhom, G., Cole, M., and Gilmore, S. (2006) Combining Measurement and Stochastic Modelling to Enhance Scheduling Decisions for a Parallel Mean Value Analysis Algorithm. Lecture Notes in Computer Science (LNCS), 3992, pages 929–936. Springer.
    doi: 10.1007/11758525

  12. Yaikhom, G. (2006) Message Passing with Communication Structures. PhD thesis, School of Informatics, University of Edinburgh.
    http://hdl.handle.net/1842/921